My Lab Notebook

In the methylpy DMRfind code, DMCpGs are collapsed into DMRs if any two are no more than 250bp apart. This is the default setting, but can be changed to any distance specified by the user with the –dmr_max_dist parameter. [Read More]

there are some inconsistency in the samples comping from different techniques(e.g RRBS shows more meth coverage than mbd for Mcap where we did not see that before we aligned reads [Read More]

This post is a follow-up to this post [Read More]

Genomic Feature Analysis [Read More]

Run DMRfind on new alignments This is the follow up analysis from these posts: [Read More]