My Lab Notebook

Gathering genomic feature data I intially downloaded the genome gff from NCBI here: ftp://ftp.ncbi.nlm.nih.gov/genomes/Salmo_salar/GFF/ref_ICSASG_v2_top_level.gff3.gz [Read More]

This post is in reference to the histology done on the Fall-Winter 2018-2019 Broodstock conditioned in constant low pH. This is data analysis for the manuscript on pH effect on reproductive development [Read More]

I re-processed the salmon RRBS data implementing the following changes: [Read More]

redo trimming I’m re-doing the trimming on the Salmon BS data with 10bp clipped off each end of the read based on bismark recommendations [Read More]

Based on the Meth_Compare project and parameters we collectively decided on in processing bisulfite sequencing data, I wanted to reprocess the salmon BS data. Before re-doing all alignments, I wanted to explore different alignment options for potential optimization. [Read More]