I can also be found on Google Scholar, ResearchGate and ORCID.

Press Releases and Media Coverage

YR Venkataraman, AS Huffmyer, SJ White, A Downey-Wall, J Ashey, DM Becker, Z Bengtsson, HM Putnam, E Strand, JA Rodríguez-Casariego, SA Wanamaker, KE Lotterhos, and SB Roberts. (2024) DNA methylation correlates with transcriptional noise in response to elevated pCO2 in the eastern oyster (Crassostrea virginica). Environmental Epigenomics. dvae018. https://doi.org/10.1093/eep/dvae018

V Velenzuela-Munoz, SA Wanamaker, G Nunez-Acuna, D Valenzuela-Miranda, A Garcia, JA Valdes, SB Roberts, and C Gallardo-Escarate. (2024) Environmental influence on the Atlantic salmon transcriptome and methylome during sea lice infestations. Fish and Shellfish Immunology. https://doi.org/10.1016/j.fsi.2024.109692

HM Putnam, SA Wanamaker, [9 others], and SB Roberts. (2024) Dynamic DNA methylation contributes to carryover effects and beneficial acclimatization in geoduck clams. Proceedings of the Royal Society B. In review. Preprint: https://doi.org/10.1101/2022.06.24.497506. *Contributed equally

SR Major, MJ Harke, R Cruz-Flores, AK Dhar, AG Bodnar, and SA Wanamaker. (2023) Rapid detection of DNA and RNA shrimp viruses using CRISPR-based diagnostics. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.02151-22.

SJ Gurr, SA Wanamaker, B Vadopalas, SB Roberts, and HM Putnam. (2022) Acclimatory gene expression of primed clams enhances robustness to elevated pCO2. Molecular Ecology. https://doi.org/10.1111/mec.16644.

ET Montaño, [37 others], SA Wanamaker, K Pogliano, and J Pogliano. (2022) Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals. PLoS ONE 17(1):e0262354. https://doi.org/10.1371/journal.pone.0262354.

SA Wanamaker*, YR Venkataraman*, MR Gavery, SB Roberts, D Bhattacharya, A Downey-Wall, JM Eirin-Lopez, KM Johnson, KE Lotterhos, JR Puritz, and HM Putnam. (2021) Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13542. * indicates co-first authorship.

SJ Gurr, SA Wanamaker, B Vadopalas, SB Roberts, and HM Putnam. (2021) Repeat exposure to hypercapnic seawater modifies growth and oxidative status in a tolerant burrowing clam. Journal of Experimental Biology. 224(13): jeb233932. https://doi.org/10.1242/jeb.233932.

BC Willige, M Zander, CY Yoo, A Phan, RM Garza, SA Wanamaker, Y He, JR Nery, H Chen, M Chen, JR Ecker, and J Chory. (2021) Phytochrome-interacting factors trigger environmentally responsive chromatin dynamics in plants. Nature Genetics. 53:955-961. https://doi.org/10.1038/s41588-021-00882-3.

SA Wanamaker, KM Mitchell, R Elliott Thompson, B Eudeline, B Vadopalas, EB Timmins-Schiffman, SB Roberts. (2020) Temporal proteomic profiling reveals critical developmental processes and temperature-influenced differences in a bivalve mollusc. BMC Genomics. https://doi.org/10.1186/s12864-020-07127-3.

SA Wanamaker, P McElhany, M Maher, D Perez, DS Busch, and KM Nichols. (2019) Uncovering mechanisms of global ocean change effects on Dungeness crab (Cancer magister) through metabolomics analysis. Scientific Reports. https://doi.org/10.1101/574798.

SA Wanamaker. (2018) High-resolution molecular networks from novel’omics’ approaches elucidate survival strategies in organsisms from land to sea. UC San Diego. ProQuest ID: Trigg_ucsd_0033D_17575. Merritt ID: ark:/13030/m5t77f99. https://escholarship.org/uc/item/0491n31k.

SA Wanamaker, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nat Methods. 14(8):819-825. https://doi.org/10.1038/nmeth.4343.

SA Wanamaker, RM Garza, A MacWilliams, JR Nery, A Bartlett, R Castanon, A Goubil, J Feeney, R O’Malley, SC Huang, ZZ Zhang, M Galli, and JR Ecker (2017) CrY2H-seq interactome screening. Protoc. Exch. https://doi.org/10.1038/protex.2017.058.

X Yang, [15 others], SA Wanamaker, [20 others], and M Vidal. (2016) Widespread expansion of protein interaction capabilities by alternative splicing. Cell. 164(4):805-817. https://doi.org/10.1016/j.cell.2016.01.029.

T Rolland, [53 others], SA Wanamaker, [14 others], and M Vidal. (2014) A proteome-scale map of the human interactome network. Cell. 159(5):1212-1226. https://doi.org/10.1016/j.cell.2014.10.050.

R Corominas, [8 others], SA Wanamaker, [18 others], M Vidal, and LM Iakoucheva. (2014) Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. Nat commun. 5:3650. https://doi.org/10.1038/ncomms4650.

O Rozenblatt-Rosen, [36 others], S Wanamaker, [13 others], and M Vidal. (2012) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature. 487(7408):491-495. https://doi.org/10.1038/nature11288.

Select Presentations

SA Wanamaker. (2021) Exploring the tolerance of Pacific geoduck to low pH through comparative physiology, genomics, and DNA methylation. The Society for Integrative and Comparative Biology (SICB) 2021 Virtual Annual Meeting. https://github.com/shellywanamaker/talk-SICB2021

SA Trigg. (2021) Diversity in animal response to environmental chnage. Data Science Coast to Coast 2021 seminar series. Academic Data Science Alliance. Recording: https://youtu.be/En2cCNCd6q4. Slide deck: https://github.com/shellywanamaker/talk-Coast2Coast2021

SA Trigg, DS Busch, P McElhany, M Maher, D Perez, C O’Brien, and KM Nichols. (2020) Searching for signs of resilience in over-wintering juvenile pteropods to ocean acidification and deoxygenation. https://doi.org/10.6084/m9.figshare.12440192.v1.

SA Trigg. (2020) Environmental influence on the Atlantic salmon epigenome during sea lice infestation. figshare. ICISB. https://doi.org/10.6084/m9.figshare.10882775.v1.

SA Trigg. (2020) A protein inventory reveals mechanisms of temperature impact on oyster development. figshare. PCSGA. https://doi.org/10.6084/m9.figshare.11839359.v1.

SA Trigg. (2020) Influence of ocean acidification on DNA methylation patterns in geoduck. figshare. PAG 2020. https://doi.org/10.6084/m9.figshare.11839356.v1.

SA Trigg. (2019) Temperature-influenced protein network differences in the Pacific Oyster (Crossostrea gigas) during larval development. Cold Spring Harbor Network Biology Conference. figshare. Poster. https://doi.org/10.6084/m9.figshare.7853573.v1