My Lab Notebook

Run DMRfind on new alignments This is the follow up analysis from these posts: [Read More]

BSseq method clarification determined the following during conference call: samples were digested with MspI but not size selected prior to library prep digested genomic DNA was randomly primed during first round of PCR in library kit (see kit schematic) all read start sites should be now be random and no... [Read More]

This entry is about trimming for the 2016 juvenile geoduck RRBS data Hollie generated. [Read More]

Contents: DMRfind with Destranded vs. stranded data Persistent DMRs Combining nearby CpG counts DMRfind false negatives Updated heatmaps DMRs compared by ANOVA vs GLM Final Conclusions [Read More]

Plotting % methylation of DMRs ID’d with ANOVA [Read More]