QC of DMRs created filtered bam files for doing quality check on the DMRs called from 9/26 script I only created filtered bam files for the all ambient timepoints comparison jupyter notebook here (section noted as “This analysis below was done on 9/26/19”) : 20190909_DMRallEPI_allc_minClst3.ipynb Filtered bam files for DMR...
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Mon. Sept. 30, Juv. Geoduck Var.low v amb Respirometry
Ran respirometry analysis of the three trials I’ve done so far.
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Mon. Sept. 30, Geoduck Genome
Genome DMR analysis
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Fri. Sept. 27, Pt. Whitney Juvenile Geoduck var.low pH experiment
Water chem Water level was low in the low pH header tank Appears to be the same thing that happened to the ambient tank last week. I turned flow up so it can maintain the water level Took discrete measurements and TA between 10:45-11. for TA, I took directly from...
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Wed. Sept. 25, Validating Juv. low pH DMRs
I realized there are differences in percent methylation between allc files, Steven’s 5x destranded bed files, and original Bismark coverage files:
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