Performing group stats on DMRs First need to determine best stats model ANOVA GLM family and link options I picked the results from one set of DMR parameters (MCmax = 10bp) and one comparison (day10 samples) to start with I ran ANOVA and GLM to see what each method identifies...
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Thur. Oct. 24, Geoduck DMR filtering
This analysis is a follow up to Wed. Oct 23 analysis
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Wed. Oct. 23, Geoduck DMR filtering
Rerun DMRfind with looser parameters
Reran DMRfind using loose parameters to be able to filter down by coverage in 3 samples/category
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Fri. Oct. 18, Pt. Whitney Juvenile Geoduck var.low pH experiment
Steven and I took end point measurments and broke down the experiment. Steven’s post for the day is here
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Fri. Oct. 11, Var.low pH x ambient Juvenile Geoduck Pt. Whitney
Experiment Day 36
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