My Lab Notebook

My goals today Get Husky card Get bus pass Geoduck meeting @ 1:30p notes from meeting: How frequently to sample Why are animals limited to 80? because feeding of live algae is limiting benefits of live algae vs. paste paste better because doesn’t mess with pH and we can have... [Read More]

##My goals for today work on Bismark alignment comparison how does Bismark compare to Methylpy? reference papers: jupyter notebook install methylpy try bowtie vs. minimap make genomes Insert size alignment setting in bowtie, this is the -I parameter default is 0; in methylpy it’s 20. Roberto’s last day lunch @12:30... [Read More]

My goals for today FISH 546 9-10 Epigenetics reading group @ NOAA NWFSC 12:30-1:30 transgenerational of envronmental info thoughts: stress opens heterochromatin => transposon/pseudo gene?/protogene? expression; does the cell just go crazy under stress and hope something works? Or is there a non-random mechanism that selects for advantageous changes? siRNAs... [Read More]

My goals for today Work on Bismark alignments Trying different alignment score settings: Looked into bowtie2 alignment manual alignement score is dependent on matches and mismatches alignment score of 0 = 100% perfect match 1 mismatch = -6 score 1 ambinguous character = 1 if there’s a gap in the... [Read More]

My goals for today Get personal items from Mukilteo field station done Farewell lunch at noon done Get everyone’s thoughts on water chemistry data table for crab metabolomics paper done [Read More]