##My goals for today
- work on Bismark alignment comparison
- how does Bismark compare to Methylpy?
- reference papers:
- jupyter notebook
- install methylpy
- try bowtie vs. minimap
- make genomes
- Insert size alignment setting
- in bowtie, this is the -I parameter
- default is 0; in methylpy it’s 20.
- in bowtie, this is the -I parameter
- how does Bismark compare to Methylpy?
- Roberto’s last day lunch @12:30