I took a quick look at Silo 2 vs Silo 3 proteomes because silo 2 had 2% survival where silo 3 had 10% survival.
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Thurs. Jan 17, 2019 Oyster Seed Proteomics, ASCA on average NSAF values for all proteins
This entry is in reference to ASCA_avgNSAFvals_AllProteins.md; R markdown file here.
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Wed. Jan 16, 2019 Oyster Seed Proteomics, ASCA on average NSAF values of filtered proteins
This entry refers to ASCA_avgNSAFvals_FilteredProteins.md; R markdown file here.
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Tues. Jan 15, 2019, Oyster Seed Proteomics, filter inconsistently detected proteins and cluster replicates
This entry refers to IdentifyAndRemoveInconsistentProteins.md; R markdown file here.
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Fri. Jan 11, 2019 Oyster Seed Proteomics, Clustering technical replicates
I compared NMDS and PCA plots of technical replicate ADJNSAF values in this md file. Rmarkdown here
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