My Lab Notebook

This entry refers to ASCA_avgNSAFvals_FilteredProteins.md; R markdown file here. [Read More]

This entry refers to IdentifyAndRemoveInconsistentProteins.md; R markdown file here. [Read More]

I compared NMDS and PCA plots of technical replicate ADJNSAF values in this md file. Rmarkdown here [Read More]

In trying to run NMDS analysis on technical replicate ADJNSAF data, I found discrepencies between the ADJNSAF values in Steven’s ABACUS_output021417NSAF.tsv and Sean’s Abacus_output.tsv. I compared Steven’s ABACUS_output021417.tsv file (from which he made ABACUS_output021417NSAF.tsv, see his jupyter notebook https://github.com/sr320/nb-2017/blob/master/C_gigas/04-Exploring-Abacus-out.ipynb) with Sean’s Abacus_output.tsv and found no difference: [Read More]

Geoduck broodstock experiment [Read More]