My Lab Notebook

Sea lice and Salmon data Start full alignments using pre-determined settings on Mox Created scripts: Salmon: 20190814_BmrkSsalar.sh Sea lice: 20190814_BmrkCalig.sh Started running 20190814_BmrkSsalar.sh @ 11:40am takes about 4.5-5 hours/sample so alignments should be done in ~4-6 days including rest of analysis (we’ll see). [Read More]

Here is a summary of new ideas for the ‘juvenile resistance to stress’ experiment following a discussion with Steven and Brent on Wed. Aug. 7: [Read More]

bedtools makewindows -b v074/Pgenerosa_v074.mRNA.bed -n 10 did this: https://github.com/s-andrews/BamQC/blob/master/README.md on ostrich had to install ant (followed these directions) BamQC results file:///Volumes/web/metacarcinus/Pgenerosa/analyses/20190806_v074/multisampleBamQcReport.html [Read More]

I. Concatenate newly trimmed reads These newly trimmed reads are from analysis started on 8/6; see notebook entry here): [Read More]

Juvenile check [Read More]