Tomorrow:

done - text Matt

done - journal club: - read article and review slides

  • get methylpy installed on mox

  • catch up on documenting analyses
    • copy data in local github repo to gannet
  • jobs to run on mox:
    • concatenate cov.gz
    • methylpy call-methylation-state, destrand, and DMRfind
    • methylpy on Salmon samples

  • buy stuff from home depot

  • register for PCSGA
  • start preparing talk
  • start preparing abstract for salmon meeting

papers: Oyster proteome Geoduck genome Pteropod Salmon Geoduck brood repro Geoduck transgen

Copy concatentated .cov.gz files to gannet

[strigg@mox1 ~]$ rsync –archive –progress –verbose /gscratch/scrubbed/strigg/analyses/20190821 strigg@ostrich.fish.washington.edu:/Volumes/web/metacarcinus/Pgenerosa/analyses/ Password: building file list … 8 files to consider 20190821/ 20190821/slurm-1207885.out 150 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=6/8) 20190821/slurm-1216155.out 150 100% 146.48kB/s 0:00:00 (xfr#2, to-chk=5/8) 20190821/slurm-1216241.out 184 100% 179.69kB/s 0:00:00 (xfr#3, to-chk=4/8) 20190821/slurm-1216400.out 229 100% 223.63kB/s 0:00:00 (xfr#4, to-chk=3/8) 20190821/slurm-1218638.out 153 100% 149.41kB/s 0:00:00 (xfr#5, to-chk=2/8) 20190821/slurm-1218905.out 72 100% 35.16kB/s 0:00:00 (xfr#6, to-chk=1/8) 20190821/uber_methylome.cov.gz 206,390,486 100% 45.26MB/s 0:00:04 (xfr#7, to-chk=0/8)

sent 206,417,186 bytes received 184 bytes 31,756,518.46 bytes/sec total size is 206,391,424 speedup is 1.00 [strigg@mox1 ~]$ rsync –archive –progress –verbose /gscratch/srlab/strigg/jobs/ strigg@ostrich.fish.washington.edu:/Volumes/web/metacarcinus/mox_jobs Password: rsync error: received SIGINT, SIGTERM, or SIGHUP (code 20) at rsync.c(638) [sender=3.1.2] [strigg@mox1 ~]$ rsync –archive –progress –verbose /gscratch/srlab/strigg/jobs/ strigg@ostrich.fish.washington.edu:/Volumes/web/metacarcinus/mox_jobs Password: building file list … 41 files to consider ./ 20190821_concatCovgz.sh 1,247 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=0/41)

sent 3,130 bytes received 286 bytes 1,366.40 bytes/sec total size is 160,838 speedup is 47.08