Genome DMR analysis
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Fri. Sept. 27, Pt. Whitney Juvenile Geoduck var.low pH experiment
Water chem Water level was low in the low pH header tank Appears to be the same thing that happened to the ambient tank last week. I turned flow up so it can maintain the water level Took discrete measurements and TA between 10:45-11. for TA, I took directly from...
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Wed. Sept. 25, Validating Juv. low pH DMRs
I realized there are differences in percent methylation between allc files, Steven’s 5x destranded bed files, and original Bismark coverage files:
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Tues. Sept. 24, Geoduck Broodstock Histology
This post is in reference to the histology done on the Fall-Winter 2018-2019 Broodstock conditioned in constant low pH. This is data analysis for the manuscript on pH effect on reproductive development
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Mon. Sept. 23, Geoduck Broodstock Histology and Juv. low pH DMRs
Broodstock histology
Met with Kaitlyn in the am and came up with the following plan for scoring gonad histology:
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