run fastqc and trim
I ended up getting this to run on Ostrich via this jupyter notebook:
20190722_SalmonSeaLice_FASTQC_TRIM.ipynb
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Fri. Jul. 19, 2019 Salmon sea lice methylomes
Received salmon sea lice methylome data!!
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Fri. Jul. 12, 2019 Salmon-Sea lice Zymo Pico Methyl prep QC and sequencing
Zymo Pico Methyl kit prep QC
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Thur. Jul. 11, 2019 Salmon-Sea lice Zymo Pico Methyl prep
Zymo Pico Methyl kit prep
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Wed. Jul. 10, 2019 Salmon-Sea lice Zymo Pico Methyl prep + RRBS digest repeat
Zymo Pico Methyl kit prep set up programs on PCR machine in 209 (called ZYM1,ZYM2, ZYM4, and ZYM5 under STRIGG folder) Into a 48-well plate, I aliquoted out 20-50ng DNA and up to 20uL of nanopure H2O according to this sheet I added 50ng of sea lice DNA: Sea lice...
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