I realized there are differences in percent methylation between allc files, Steven’s 5x destranded bed files, and original Bismark coverage files:
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Tues. Sept. 24, Geoduck Broodstock Histology
This post is in reference to the histology done on the Fall-Winter 2018-2019 Broodstock conditioned in constant low pH. This is data analysis for the manuscript on pH effect on reproductive development
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Mon. Sept. 23, Geoduck Broodstock Histology and Juv. low pH DMRs
Broodstock histology
Met with Kaitlyn in the am and came up with the following plan for scoring gonad histology:
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Fri. Sept. 20, Salmon/Sea lice BS-data and M-bias
Caligus call with Christian
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Thur. Sept. 19, 2019 Pt. Whitney Juvenile Var.low pH experiment
Water chemistry Took discrete measurements and TA around 2:30pm for TA, I took directly from the discrete measurment water after filtering it through 20uM. The discrete measurement water samples were directly from the headers and inside the silos (using clean TA cups) everything looked as it should @5:40pm calibrated B5...
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