also created this spreadsheet to keep track of the ethanol-preserved Atlantic Salmon skin samples Christian brought.
need to determine best method for epigenetic analysis for these samples (e.g. ATAC-seq, amplicon BS-seq, ChIP-seq, etc.)
it’s hard to say how well the chromatin structure is maintained in ethanol fixed samples (see ATAC-seq references on Epigenome methods slide. This could contribute to variation between individuals.
From the references I found so far (see Epigenome methods slide), it seems like RRBS or amplicon BS sequencing would be the better way to go.