Q3 Goals

USDA Multi-omics

  • finalize biomarkers from perkinsus RNAseq meta-analysis
    • compare to findings in original publications
    • summarize that work to-date
  • develop training content
    • finish screencast demoing nf-core FetchNGS pipeline on Hyak
    • create other screencasts for RNAseq, methylseq, and diffabundance pipelines
    • help Steve create screencast demoing running nf-core RNAseq on seqera
  • disseminate training
    • run a training session with Roberts lab
    • create github issue for roberts lab members to reproduce pipeline on Hyak
  • Add biomarker database section to website
  • Add section for form for data set submissions/data analysis requests

MERHAB

  • create project website on github
    • add sample database page
    • add media toolkit page
  • help Olivia complete media toolkit and send for review
  • help Taylor complete experiments for DabA manuscript

MS submissions

  • Submit geoduck reproductive development histology report
  • submit shrimp diagnostic report
  • help generate figures for DabA manuscript

Grant proposals

  • Submit Keck foundation preproposal
  • Send 1-pager to NSF IOS program manager
  • identify other funding opportunities that could support research-integrated teaching/outreach
  • complete trainings for UW PI grant stuff (email from Lisa)

Professional development

  • get teaching experience (curriculum design?)
  • connect with Gloucester HS
  • collab with Maritime Gloucester/Salem Sound Coast Watch